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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcaatggtgtcacctgtattttctatatatatcaattttatgctaagtgtgtatatttataacatccaatgcctatagATTCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGTTTCTCTGCTTTCTCAGTTCTTTCATTCTGTCGCAACCACCATCTACTTC

Basic information

species Glycine max
transcript GLYMA20G34340.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34340.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0049g01650.t01 (Vitis vinifera), 3'ss of exon 3
------------gtgagttcaatggtgtcac---ctgtattttctatat-----atatcaattttatgctaagt--gtgtatatttataacatccaatgcctatagATTCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGTTTCTCTGCTTTCTCAGTTCTTTCATTCTGTCGCAACCACCATCTACTTC
              |  ||  ||  ||||||   ||  | ||| ||  |      ||   |||   |  |||    | | ||  | |||| |    ||  | |||| | || || |||| ||| |||||||||||| |  | |||||||| |||| |||||| || || ||||||||||| || || |||||||||||||| || |
gtgagatcgctgaagcattgtattatgtcacatccttgagtttttaagttaatagtagtcattacctcttaaccaggagaatgatcataataatggattgcaatagGTCCCGATATGTGCTTCAATCTGGTCCTGCCCGGCAGAAGGAGTAATGACTTTCTCGGCCTTTTCAGTTCTTTCGTTTTGCCGCAACCACCATCTCCTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatatatcaattttatgctaagtgtgtatatttataacatccaatgcctatagATTCCAATTTGTGGTTCTATCTGGTCCTGCTCTTCTGAAGGAGTTATGAGTTTCTCTGCTTTCTCAGTTCTTTCATTCTGTCGCAACCACCATCTACTTC
                                 ttataac  putative branch site (score: 2)
                          tgtatatttataacat  TA-rich tract