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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTTAATGCCCCAAAACCCAGCAGCATGGAGTGCATGGAATTTTCTTGGTAGTAACAACAACAAAGTTTGTCTAACATACTGGATCAATATTCTTCAGgttggcaaattttatataaatgcattgatcataactgaactgtcttgggcctattctatctaaagagggtaatggacaaaattgttggttaatatttattctaatttgcag

Basic information

species Glycine max
transcript GLYMA20G34340.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34340.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0049g01650.t01 (Vitis vinifera), 5'ss of exon 8
AAATTTAATGCCCCAAAACCCAGCAGCATGGAGTGCATGGAATTTTCTTGGTAGTAACAACAACAAAGTTTGTCTAACATACTGGATCAATATTCTTCAGgttgg-caaattttatataaatgcattgatcataactgaactgtcttgggcctattctatctaaagagggtaatggacaaaattgttggttaatatttattctaatttgcag
|||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||   |||||||||| ||  | || |||||| ||||| | ||||||||| | |  || ||  |    ||  |  |       || |||   ||   | | || | |    ||| | ||  |  |   ||| |   | |  | || || |         
AAATTTCATGCCCCAAAACCCAGCAGCATGGAGTGCTTGGAATTTTCTTGGAACTATAGACAACAAAGTGTGCTTGACGTACTGGCTCAATGTCCTTCAGgttcgtcccatatttcacttttgtgtgaactgattttgtacttctttcaacatttttttt----agaagatatggaccctgattct--atgaggacttgttattga------

upper sequence: GLYMA20G34340.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0049g01620.t01 (Vitis vinifera), 5'ss of exon 5
AAATTTAATGCCCCAAAACCCAGCAGCATGGAGTGCATGGAATTTTCTTGGTAGTAACAACAACAAAGTTTGTCTAACATACTGGATCAATATTCTTCAGgttggcaaattttatataaatgcattgatcataactgaactgtcttgggcctattctatctaaagagggtaatggacaaaattgttggttaatatttattctaatttgcag
|||||| |||||||||||||||||||||||||| || |||||||||||||| |  |   | |||||||| ||  || |||||||| ||||| | ||||||||| |     | |  |    ||  |  |       || ||| ||||    | ||| | | || |||     ||||||     | |   |    | || ||  | |      
AAATTTCATGCCCCAAAACCCAGCAGCATGGAGCGCTTGGAATTTTCTTGGAACCATAGAGAACAAAGTATGCTTATCATACTGGCTCAATGTGCTTCAGgttcgtcccatattcacttttgtgtgaactgattttgtact-tctttcagcaattgtttttagagat----atggaccctgat-tctatggggacttgttgcattg-----