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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctattaatttgattgaaactcacttttgtatgttaaattcaagtaactacttacaacagctaattattatgtttatttttgtgctgacagTGAAATTTTGGCTCTCGGATTCAATGAAAAATTTATCAGGACATGGGAATACTATTTTGATTACTGTGGTGCAGGTTTTAAGTCACTCACACTAGGGAAT

Basic information

species Glycine max
transcript GLYMA20G34340.1
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G34340.1 (Glycine max), 3'ss of exon 24
lower sequence: Vv05s0049g01620.t01 (Vitis vinifera), 3'ss of exon 19
gtatgctattaatttgattgaaactcacttttgtatgttaaattcaagtaactacttacaacagctaattattatgtt-----tatttttgtgctg----acagTGAAATTTTGGCTCTCGGATTCAATGAAAAATTTATCAGGACATGGGAATACTATTTTGATTACTGTGGTGCAGGTTTTAAGTCACTCACACTAGGGAAT
  | | ||||    |  ||| |||| | ||  ||||  |||||  || |   |  ||    ||| |||   | |||||      |||||||   ||     |||  ||||| | |  || ||||||||||| || || || |||||||||||||| ||||||||||| ||||  || ||||||||  | | ||| || ||  ||
-caagttattt-catatttgtaactta-ttgggtattataaatgaaaatggttttttg-ggcagttaaaattaatgttgggggcatttttggtgtgtggtgcagCAAAATTATAGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAATATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCGCACGCTGGGAGAT

upper sequence: GLYMA20G34340.1 (Glycine max), 3'ss of exon 24
lower sequence: Vv05s0049g01650.t01 (Vitis vinifera), 3'ss of exon 23
gtatgctattaatttgattgaaact--cacttttgtatgttaaattcaagtaactacttacaac---agctaattattatgtttatttttgtgctg-acagTGAAATTTTGGCTCTCGGATTCAATGAAAAATTTATCAGGACATGGGAATACTATTTTGATTACTGTGGTGCAGGTTTTAAGTCACTCACACTAGGGAAT
 ||||  || ||  || |||  ||   || |||||| | | |||   |   |  |     ||     | || ||| |   |    |||| |||  |  |||  ||||| | |  || ||||||||||| || || || ||||||||||| || ||||||||||| ||||  || ||||||||  | | ||| || || |||
ttatgg-atgaaaatggttgtcacaaacatttttgtttttaaaaaatagaaattttggcgcagttaaaactgattttgggggcatttttggtgtggtgcagCAAAATTATCGAGCTTGGATTCAATGAGAAGTTCATAAGGACATGGGAGTATTATTTTGATTATTGTGCAGCTGGTTTTAAAACTCACACTCTGGGAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561043|gb|CD486881.1|CD486881
EST:     TACTACCAAACACTCAGATGCTGGAGAAAAAACTTCTTGAAAAGGCAGAA                         TGAAATTTTGGCTCTCGGATTCAATGAAAAATTTATCAGGACATGGGAATA
genomic: TACTACCAAACACTCAGATGCTGGAGAAAAAACTTCTTGAAAAGGCAGAAgtatgctatt ... gtgctgacagTGAAATTTTGGCTCTCGGATTCAATGAAAAATTTATCAGGACATGGGAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcaagtaactacttacaacagctaattattatgtttatttttgtgctgacagTGAAATTTTGGCTCTCGGATTCAATGAAAAATTTATCAGGACATGGGAATACTATTTTGATTACTGTGGTGCAGGTTTTAAGTCACTCACACTAGGGAAT
                                        tttttgt  CT-rich tract
                         taattattatgtttat  TA-rich tract