1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' |
GAACGCTCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtgtgttactgtttgaagaaaattctttccattgacaccagctctctaaagactgtctttgactgtgtttttatcag
species | Glycine max |
transcript | GLYMA20G34020.1 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
EST: TCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAG GGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGEST: gi|6071342|gb|AW100729.1|AW100729
genomic: TCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtgtgttact ... tttttatcagGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAG
EST: CAAGATCTTANCAA-CTGCCCATTTAGAGTCGNTGATGAGATCAACCAAG GGATGGNACCCA-TAAATGAAAGGAAGATGTTNCAGCNATTAGTGAGAGCAEST: gi|22522297|gb|BU081099.1|BU081099
genomic: CAAGATCTTA-CAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtgtgttact ... tttttatcagGGATGG-ACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCA
EST: TCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAG GGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGEST: gi|8402650|gb|BE058284.1|BE058284
genomic: TCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtgtgttact ... tttttatcagGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAG
EST: AGATCAACCAAG GGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAGEST: gi|193703777|gb|FK634735.1|FK634735
genomic: AGATCAACCAAGgtgtgttact ... tttttatcagGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAG
EST: TCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAG GGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAG
genomic: TCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtgtgttact ... tttttatcagGGATGGACCCAATAAATGAAAGGAAGATGTTCCAGCAATTAGTGAGAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACGCTCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtgtgttactgtttgaagaaaattctttccattgacaccagctctctaaagactgtctttgactgtgtttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA