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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGAAGAGAACCAATGTTCTCCTCCTCGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCTgtaagttacgaatctctttgccaaatttatgttcttctaattgcttgggtaacacgtaattaatacagaggctcaactgtataaaattattgttgcag

Basic information

species Glycine max
transcript GLYMA20G33690.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33690.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g44660.1 (Oryza sativa), 5'ss of exon 7
TGAAGAAGAGAACCAATGTTCTCCTCCTCGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCTgtaagttacgaatctctttgccaaatttatgttcttctaatt----gcttgggtaacacgtaattaatacagaggctcaactgtataaaattattgttgcag
|||||||||| |||||||| || ||||| || ||||||| ||| ||| | ||||||||||||||| | || ||||| |   | ||  |  | ||||| ||||||||       ||  |   |    || |    | | | ||      ||   |    |   ||  |||     | | | |   ||  |  ||    || | 
TGAAGAAGAGGACCAATGTGCTTCTCCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTgtaagtagacttccttatcatcttgctttttgcttaccatttttagatttatcttctgctgcatctatagcttagtttatccccatggatctag-actgta-

upper sequence: GLYMA20G33690.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G157310_T02 (Zea mays), 5'ss of exon 7
TGAAGAAGAGAACCAATGTTCTCCTCCTCGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCTgtaagttacgaatctctttgccaaatttatgttcttctaattgcttgggtaacacgtaattaatacagaggctcaactgtataaaattattgttgcag------
||||||| || |||||||| || || || || ||||||| ||| |||||||| |||||||||||||| || ||||| |   | ||  |  | |||||||||| |||    ||  | ||  |    || ||    |   | | ||   | ||  ||    ||   ||      |    | || |   |  ||    ||       
TGAAGAAAAGGACCAATGTGCTGCTACTTGGCGATCACATTGGGGACTTGGGGATGTCTGATGGTTTAAACTATGACAACAGGATCGCTGTTGGATTCCTgttagt----aactttttgactgccttgattcattcaaagtagcagtgatattaccatcttgggactaccatttttttttaaattctgcttaagtcaattaagc

upper sequence: GLYMA20G33690.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0073g00650.t01 (Vitis vinifera), 5'ss of exon 8
TGAAGAAGAGAACCAATGTTCTCCTCCTCGGTGATCACACTGGAGACTTGGGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCTgtaagttacgaatctctttgccaaatttatgttcttctaattgcttgggtaac-acgtaattaatacagaggctcaactgtataaaattattgttgcag----
||||||||||||||||||| || || || |||||||||| |||||||||||||||||| ||||||||| | ||||| |||||||||||  |||||||||||||||||| |     ||||||   || |   |   ||||||    |   |    |  | | || | |     || || | |||     | || |  ||     
TGAAGAAGAGAACCAATGTGCTGCTTCTTGGTGATCACATTGGAGACTTGGGAATGTCAGATGGTTTGGACTATGAAACTCGAATATCTGTGGGATTCCTgtaagtta-gttagactttgctcgatctccata--tctaatcttattattgctgattttaatatttctcctcctaaaatatatccttatgttataacaacttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016010|gb|CX702752.1|CX702752
EST:     GGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCT                         GAATCACAACGTTGAGAACTCACTTAGCTGCTATCAAGAAGCTTTTGATGT
genomic: GGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCTgtaagttacg ... attgttgcagGAATCACAACGTTGAGAACTCACTTAGCTGCTATCAAGAAGCTTTTGATGT
EST: gi|58023122|gb|CX709863.1|CX709863
EST:     GGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCT                         GAATCACAACGTTGAGAACTCACTTAGCTGCTATCAAGAAGCTTTTGATGT
genomic: GGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCTgtaagttacg ... attgttgcagGAATCACAACGTTGAGAACTCACTTAGCTGCTATCAAGAAGCTTTTGATGT
EST: gi|58024648|gb|CX711389.1|CX711389
EST:     GGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCT                         GAATCACAACGTTGAGAACTCACTTAGCTGCTATCAAGAAGCTTTTGATGT
genomic: GGAATGTCTGATGGTTTGAATTATGAGACTCGAATATCCATGGGATTCCTgtaagttacg ... attgttgcagGAATCACAACGTTGAGAACTCACTTAGCTGCTATCAAGAAGCTTTTGATGT