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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgaattaatggtggatatataggctctaagttgaacagtgacattcagtattggcattaatgctttttgctgaaactctaaatgtggtgtatcagGTGGGGAAAAACACACGGTCTTCTTGTTGAGGGAGGACTTACATATGATTCAATAAGACAATCAGTTGCTAATGCCAACATAGCTTTCAGGGAAGGTGTT

Basic information

species Glycine max
transcript GLYMA20G33690.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33690.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0073g00650.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------------------------gtgtgtgaattaatggtg-gatatataggctctaagttgaacagtgacattcagtattggcattaatgctttttgctgaaactctaaatgtggtg---tatcagGTGGGGAAAAACACACGGTCTTCTTGTTGAGGGAGGACTTACATATGATTCAATAAGACAATCAGTTGCTAATGCCAACATAGCTTTCAGGGAAGGTGTT
                                                           |||  |||     ||  || |    | | |         |      | ||  |||||  || | | | ||   |||| ||   | | |  |     ||||||||||| ||||| || | ||||||| ||||||| || |||||||||||| | ||||   | || || |||||| |||  ||  | ||||| || || |||
gtatatgatgcaatctttgatcatcggctactataactttcatgttcactggaatgacttgtttatttcgtatgcaatctgagagtttttcccctcctaagtttctccaagattgggttttaagatatt-attgaagctactagtttcatcaatcatcagGTGGGGGAAAACCCATGCTCTTCTTATTGAGGGTGGCCTTACATATGATGCGATAACGAAGTCGGTGGCTAATTCCATGATTACCTTCAGAGAGGGAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016010|gb|CX702752.1|CX702752
EST:     TCGCCGACTA-TGGAC-TGAAAAGAGAAAACGAAGCTCATGGAAGAGTG                         GTGGGGAAAAACACACGGTCTTCTTG-TGNAGGGAGGACTTACATATGATT
genomic: TCGCCGACTATTGGACTTG--AAGAGAAAACGAAGCTCATGGAAGAGTGgtgtgtgaat ... ggtgtatcagGTGGGGAAAAACACACGGTCTTCTTGTTG-AGGGAGGACTTACATATGATT
EST: gi|58023122|gb|CX709863.1|CX709863
EST:     TCGCCGACTATTGGACTTGAAGAGAAAACGAAGCTCATGAAAGAGTG                         GTGGGGAAAAACACACGGTCTTCTTGTTGAGGGAGGACTTACATATGATTC
genomic: TCGCCGACTATTGGACTTGAAGAGAAAACGAAGCTCATGGAAGAGTGgtgtgtgaat ... ggtgtatcagGTGGGGAAAAACACACGGTCTTCTTGTTGAGGGAGGACTTACATATGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattcagtattggcattaatgctttttgctgaaactctaaatgtggtgtatcagGTGGGGAAAAACACACGGTCTTCTTGTTGAGGGAGGACTTACATATGATTCAATAAGACAATCAGTTGCTAATGCCAACATAGCTTTCAGGGAAGGTGTT
                                   ctctaaa  putative branch site (score: 3)
               attaat  TA-rich tract