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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGGGAGGACTTACATATGATTCAATAAGACAATCAGTTGCTAATGCCAACATAGCTTTCAGGGAAGGTGTTTCTGAACTTTTTGAGTTTCTGGAGgtatatttcccatccttctttggcagatataagttcttacatgttgatatgttcattgtatatcaggtgaatatatgaaatgaaatatatatgcatgaaaattcaaacattcaattgctgacactggttcctgtattctatttttaatctttag

Basic information

species Glycine max
transcript GLYMA20G33690.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G33690.1 (Glycine max), 5'ss of exon 5
lower sequence: AT2G38680.1 (Arabidopsis thaliana), 5'ss of exon 5
TGTTGAGGGAGGACTTACATATGATTCAATAAGACAATCAGTTGCTAATGCCAACATAGCTTTCAGGGAAGGTGTTTCTGAACTTTTTGAGTTTCTGGAGgtatattt------cccatccttctttggcagatataagttcttacatgttgatatgttcatt-gtatatcaggtgaatatatgaaatgaaatatatatgcatgaaaattcaaacattcaattgctgacactggttcctgtattctatttttaatctttag
  ||||||||||  | ||||||||  |||| |   |||| ||||| ||| |   ||||||||| || |||||||| ||||||||||| || ||| |||||||| ||          ||  | | ||| | |||  ||   | | |      |  |     ||| |||| | |    |   |||    || ||| | | |                                                              
CATTGAGGGAGGTTTGACATATGACGCAATCAAGAAATCTGTTGCGAATTCTTCCATAGCTTTTAGAGAAGGTGTGTCTGAACTTTTCGAATTTTTGGAGgtaaataaatggaattcaatcatgttttgtagagttatactttaatggtgaggaacaactattagtatcttaatccaccttatt---tgcaatctgtttcag-----------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016010|gb|CX702752.1|CX702752
EST:     CCAACATAGCTTTCAGGGAAGGTGTTTCTGAACTTTTTGAGTTTCTGGAG                         GAAAGAGATATTCCTGTGTTAATATTCTCAGCCGGGCTTGCTGATATCATT
genomic: CCAACATAGCTTTCAGGGAAGGTGTTTCTGAACTTTTTGAGTTTCTGGAGgtatatttcc ... taatctttagGAAAGAGATATTCCTGTGTTAATATTCTCAGCCGGGCTTGCTGATATCATT
EST: gi|58023122|gb|CX709863.1|CX709863
EST:     CCAACATAGCTTTCAGGGAAGGTGTTTCTGAACTTTTTGAGTTTCTGGAG                         GAAAGAGATATTCCTGTGTTAATATTCTCAGCCGGGCTTGCTGATATCATT
genomic: CCAACATAGCTTTCAGGGAAGGTGTTTCTGAACTTTTTGAGTTTCTGGAGgtatatttcc ... taatctttagGAAAGAGATATTCCTGTGTTAATATTCTCAGCCGGGCTTGCTGATATCATT