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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGCAGATATGAAATCCATAAATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAGgtaattaatgtttctcagtgatatatattgcctgttgcatataacttttccagaatgtacaactgtactttcagagagaattagaacttgggaaaatgta...

Basic information

species Glycine max
transcript GLYMA20G32370.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32370.1 (Glycine max), 5'ss of exon 24
lower sequence: AT3G10380.1 (Arabidopsis thaliana), 5'ss of exon 24
GCTTTGGCAGATATGAAATCCATAAATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAGgtaattaat-gtttctcagtgatatatattgcctgttgcatataacttttccagaatgtacaactgtacttt-cagagagaattagaacttgggaaaatgta
|||||||| || |||| ||| || || ||||| || ||||||||||| ||||| ||  |||||||| ||||||||||||  | | |||    | |  ||   ||| ||   ||||| | ||| |   |   |||     | |||  | |||                          
GCTTTGGCTGACATGAGATCAATCAACCTTTTCGGGGTTCAACAAATATGTCGGAACACTATTGCAGTGGAACAGgtaaagatttgttcactatttttagtaatttccaactgcat-tcactatcttaatgtgtgtgtatttacactgcag--------------------------

upper sequence: GLYMA20G32370.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 5'ss of exon 22
GCTTTGGCAGATATGAAATCCATAAATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAGgtaa---ttaatgtttctcagtgatatatattgcctgttgcatataacttttccagaatgtacaactgtactttcagagagaattagaacttgggaaaatgta
|||||||| || ||||||||||| || |||||||| ||||| || || ||||| ||| | ||||||||||||||||||    ||| | ||| |   |  | | | ||   | || | | |      |  | ||||    |    || | ||  | |  |  | || |  | |  ||  
GCTTTGGCTGACATGAAATCCATCAACCTTTTTGGGGTTCAGCAGATATGTCGGAATTCAATTGCATTGGAACAGgtacattttattctttttttttcttttcttttctttttttctttttttcacttaaaaatgattgaaataacatacaatgtg--tgggcacatctgcacctgc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330665|gb|GR841930.1|GR841930
EST:     ATC-TTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|19452625|gb|BM954035.1|BM954035
EST:     ATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|51343541|gb|CO984274.1|CO984274
EST:     ATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG