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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGTCCCAATGTGCTTCAAGAGGGTTATGGTTCTGCAGCAGTTTTGCCTGAGGAAGGCATATATTTAGCGGCATCCATATACCGACCTGTGCTTCAGgtgttgcatattggattgccatactcctttgtatgaagttttgatcatgttccttattgtgtttgttgttgacctggttctttgtgcag

Basic information

species Glycine max
transcript GLYMA20G32370.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32370.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G10380.1 (Arabidopsis thaliana), 5'ss of exon 14
GAAGGGTCCCAATGTGCTTCAAGAGGGTTATGGTTCTGCAGCAGTTTTGCCTGAGGAAGGCATATATTTAGCGGCATCCATATACCGACCTGTGCTTCAGgtgttgcatattggattgccatactcctttgtatgaagttttgatcatgttccttattgtgtttgttgttgacctggttctttgtgcag
|| || ||| ||||     |  || |||||||| |||||||| |||||||||||  |||| |||||| |||| ||||| || ||||| ||||| |||||||| ||  ||  ||| |   | ||  | | |  ||  | | |  ||||  ||  ||  |    || |    || ||  |   |  |||||
GAGGGCTCCAAATGCATCACTGGAAGGTTATGGATCTGCAGCTGTTTTGCCTGAACAAGGAATATATCTAGCTGCATCTATTTACCGGCCTGTTCTTCAGgt-ttagattctggttcatc-taagcatcttcattcaatgtc-atcagttttttttgtagacttat----gatcttatgtgtcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18735360|gb|BM528721.1|BM528721
EST:     CTGAGGAAGGCATATATTTAGCGGCATCCATATACCGACCTGTGCTTCAG                         TTCACAGATAAAGTTGCTTCAATGCTGCCAACAAAGTATTCCCAACTCGG
genomic: CTGAGGAAGGCATATATTTAGCGGCATCCATATACCGACCTGTGCTTCAGgtgttgcata ... ctttgtgcagTTCACAGATAAAGTTGCTTCAATGCTGCCAACAAAGTATTCCCAACTCGG