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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttctacatgcttttcaatttagacaatgttttaattgtgtataaagccagtatatatgccatgttatcagtatggcaattcagattttaggtt...

Basic information

species Glycine max
transcript GLYMA20G32370.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32370.1 (Glycine max), 5'ss of exon 20
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 5'ss of exon 18
GAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttctacatgcttttcaatttagacaatgttttaattgtgtataaagccagtatatatgccatgttatcagtat---ggcaattca-gattttaggtt-
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GAGAATCTAATTCGTGATGATAACAAACTTATTTTGCTGGCTTCTCTTAGTGATTCATTGGAGTATGTTGCAGACTCAATTGAAAGgcaagtttt-----tatttctgattgcagtcatgaatttatgttagagtgatcttttttaaagtctcacttgcaaagtatatgggcaaatagtgaagttatgcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330664|gb|GR841929.1|GR841929
EST:     TTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG                         GCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA
genomic: TTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttc ... taaattgcagGCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA
EST: gi|192297269|gb|FG990617.1|FG990617
EST:     TTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG                         GCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA
genomic: TTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGgtgggttttc ... taaattgcagGCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCA