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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttttctgtgtatactaacaaattactattcttgcttaatgatataattttcttcctatttttgagtggaattttactgaacatcccctctccttgggggtcccttcctatttattatgcttgtctggtgactttgttgtatttttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG

Basic information

species Glycine max
transcript GLYMA20G32370.1
intron # 19
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G32370.1 (Glycine max), 3'ss of exon 19
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 17
gtttgtttttctgtgtatactaacaaattactattcttgcttaatgata--taattttcttcctatttttgagtggaattttactgaacatcccctctccttgggggtcccttcctatttattatgcttgtctggtgactttgttgtatttttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG
                                      ||| | | |||  | | ||  ||  || | |   | ||   |||| |||| ||          |   |       | ||   |||    || | ||      || |  | | | |  | ||||| || ||||| | |||||| |||||||||||| || |||| || |||||||| ||||| ||||||||||||||||| ||||||||
--------------------------------------gctgagttatagatgaattgttttttaatgtattgaggctctttaatgaaaatg---------taaag-------cttacccattggcgttctttg------ttctcctctctgtcatgcagGAGAATCTAATTCGTGATGATAACAAACTTATTTTGCTGGCTTCTCTTAGTGATTCATTGGAGTATGTTGCAGACTCAATTGAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330664|gb|GR841929.1|GR841929
EST:     CTGAATTAGAACTTGGTGAATTACTGCTAAATTTGCGTCCTATTAAACAG                         GAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGT
genomic: CTGAATTAGAACTTGGTGAATTACTGCTAAATTTGCGTCCTATTAAACAGgtttgttttt ... tttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGT
EST: gi|192297269|gb|FG990617.1|FG990617
EST:     CTGAATTAGAACTTGGTGAATTACTGCTAAATTTGCGTCCTATTAAACAG                         GAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGT
genomic: CTGAATTAGAACTTGGTGAATTACTGCTAAATTTGCGTCCTATTAAACAGgtttgttttt ... tttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtcccttcctatttattatgcttgtctggtgactttgttgtatttttgcttcagGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAG
                                           tttttgcttc  CT-rich tract
      ttcctatttattat  TA-rich tract