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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttatttttaatctctaatgcttttctttttttcttcagatggatgggtttcagagggaaagccacgcttatgtttattgatttcctctcatctgctattgttcttatgtttcctttccttcctaaaacttccctccatgacattcttgatcatccagtcatgcatagttgttttcatttgaaccag

Basic information

species Glycine max
transcript GLYMA20G31860.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193433649|gb|FK403161.1|FK403161
EST:     GTAAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG                         GAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAAGAAA
genomic: GT-AAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttattttta ... tttgaaccagGAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAAGAAA
EST: gi|193371931|gb|FK336492.1|FK336492
EST:     AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG                         GAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAAGAAA
genomic: AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttattttta ... tttgaaccagGAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAAGAAA
EST: gi|193422441|gb|FK387562.1|FK387562
EST:     AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG                         GAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAAGAAA
genomic: AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttattttta ... tttgaaccagGAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAAGAAA
EST: gi|208127823|gb|GD924015.1|GD924015
EST:     AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG                         GAAAACCAGCACTCAGTG
genomic: AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttattttta ... tttgaaccagGAAAACCAGCACTCAGTG
EST: gi|254328533|gb|GR832905.1|GR832905
EST:     AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG                         GAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACAAACATACAAGAAA
genomic: AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttattttta ... tttgaaccagGAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAAGAAA
EST: gi|207801164|gb|GD774172.1|GD774172
EST:     AGTAAA-TATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG                         GAAAACCAGCACTCAGTG
genomic: AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttattttta ... tttgaaccagGAAAACCAGCACTCAGTG
EST: gi|5760781|gb|AI966144.1|AI966144
EST:     AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG                         GAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAA
genomic: AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttattttta ... tttgaaccagGAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAA
EST: gi|254328534|gb|GR832906.1|GR832906
EST:     AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG                         GAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACAAACATACAAGAAA
genomic: AGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAGgttattttta ... tttgaaccagGAAAACCAGCACTCAGTGTAGTGGACATTCTAGAGACGAACATACAAGAAA