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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATACAAAGCAGGAACTTGGGAAGATTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtgacattagattaagatagcatggatatttcattttgcctattcataatgagtattaataatccagctgcaagaactctgtaatatttaaagt...

Basic information

species Glycine max
transcript GLYMA20G31860.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193433649|gb|FK403161.1|FK403161
EST:     TGCAAAGATGTTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG                         GTGACTATTAATCAACCAATTGGAATAGTAAAAATATCCTGGTGTTGCTAA
genomic: TGCAAAGATG-TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGT-AAAATATCCTGGTGTTGCTAA
EST: gi|193371931|gb|FK336492.1|FK336492
EST:     TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG                         GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
genomic: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: gi|193422441|gb|FK387562.1|FK387562
EST:     TGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG                         GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
genomic: TGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: gi|208127823|gb|GD924015.1|GD924015
EST:     TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG                         GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
genomic: TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: gi|254328533|gb|GR832905.1|GR832905
EST:     TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG                         GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
genomic: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: gi|207801164|gb|GD774172.1|GD774172
EST:     TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG                         GTGACTATTAATCAACCAATTGGAATAGTAAA-TATCCTGGTGTTGCTAAA
genomic: TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: gi|5760781|gb|AI966144.1|AI966144
EST:     TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG                         GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
genomic: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: gi|254328534|gb|GR832906.1|GR832906
EST:     -TGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG                         GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
genomic: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATACAAAGCAGGAACTTGGGAAGATTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtgacattagattaagatagcatggatatttcattttgcctattcataatgagtattaataatccagctgcaagaactctgtaatatttaaagt

- - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - -  AAGATG