1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ctattaaattgttaattcatgcttatttagaacatttttttgctctgtttagtcttcatcaattttgcttgtataacttgaaggttgttttgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG
species | Glycine max |
transcript | GLYMA20G31860.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGCAAAGATGTTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG GTGACTATTAATCAACCAATTGGAATAGTAAAAATATCCTGGTGTTGCTAAEST: gi|193371931|gb|FK336492.1|FK336492
genomic: TGCAAAGATG-TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGT-AAAATATCCTGGTGTTGCTAA
EST: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAEST: gi|193422441|gb|FK387562.1|FK387562
genomic: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: TGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAEST: gi|208127823|gb|GD924015.1|GD924015
genomic: TGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAEST: gi|254328533|gb|GR832905.1|GR832905
genomic: TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAEST: gi|207801164|gb|GD774172.1|GD774172
genomic: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG GTGACTATTAATCAACCAATTGGAATAGTAAA-TATCCTGGTGTTGCTAAAEST: gi|5760781|gb|AI966144.1|AI966144
genomic: TACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAEST: gi|254328534|gb|GR832906.1|GR832906
genomic: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
EST: -TGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAG GTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
genomic: TTGCAAAGATGTACCGAGCTCTTGTGAGTGGGATAGTTGAGAATGACAAGgtgatagtga ... tgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAA
tgtttagtcttcatcaattttgcttgtataacttgaaggttgttttgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG
gtataac putative branch site (score: 3)
ttttgcttt putative PPT
atcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattaaattgttaattcatgcttatttagaacatttttttgctctgtttagtcttcatcaattttgcttgtataacttgaaggttgttttgctttacagGTGACTATTAATCAACCAATTGGAATAGTAAAATATCCTGGTGTTGCTAAAGGGTTATACGTTGCTTCTGAATCAG
- - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - -gtcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgtt