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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAGgtatattaaagtatcaatctcaaataatgttatgatagttgcacaatgtcaaagatcgtatgatcagtaatttggtagtggaattcatttgttctaggat...

Basic information

species Glycine max
transcript GLYMA20G31860.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31860.1 (Glycine max), 5'ss of exon 13
lower sequence: Vv13s0019g04000.t01 (Vitis vinifera), 5'ss of exon 13
GGGTTATCAGAGACCTACGAAACCAGTTCCCGGAGATTGTGGGTATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAGgta--tattaaagtatcaatctcaaataatgttatgatagttgcacaatgtcaaagatcgtatgatcagtaatttgg-tagtggaattcatttg---ttctaggat--
 || |||||  | ||   |||||| ||||| ||||||||||| ||  | |||||||||||| |||||||||| || || ||||| || || |||| |  |||| |      ||| |    |  |   |  |   |||||     |||  ||| || |||      ||| |  || |  ||||    ||   | | |  |   
AGGGTATCAACGGCCAGTGAAACCTGTTCCTGGAGATTGTGGATACCATTTGCATGCACATCAATTGGTTCTTTCCCACCCGACCACAAATGAGGAAAgtattgagaggataattt--ggtgctagaaaaagcattgcatgt--tcatcgattgtgtgaaacaggattggactaatttaatttccatgggataccaaaacct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601120|gb|BQ611451.1|BQ611451
EST:     ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAG                         TTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG
genomic: ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAGgtatattaaa ... gttattgcagTTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG
EST: gi|208202094|gb|GD997073.1|GD997073
EST:     ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAG                         TTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACATCAGAAGAG
genomic: ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAGgtatattaaa ... gttattgcagTTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG
EST: gi|5752561|gb|AI959848.1|AI959848
EST:     ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAG                         TTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG
genomic: ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAGgtatattaaa ... gttattgcagTTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG
EST: gi|254328533|gb|GR832905.1|GR832905
EST:     ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAG                         TTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG
genomic: ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAGgtatattaaa ... gttattgcagTTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG
EST: gi|254328534|gb|GR832906.1|GR832906
EST:     ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAG                         TTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG
genomic: ATTACTTGCATGCACATAAATTGGTTCTCTCTCATCCGACAACTAACGAGgtatattaaa ... gttattgcagTTAATTGAAATTATTGCACCCCTTCCTTCTGCCCTCCACACAGCAGAAGAG