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gtgatgagtgataactctttttgtcattttgttgatgtttattttttatttttcgaaattatcgcttactttattgtgcagGATGATTGGCCCTGCAATGCCATCAGTTGAATTACTTGCTGCTGCTGCAAAATTAACAGAGGCACAGACTGAGCTCAG
species | Glycine max |
transcript | GLYMA20G31560.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACCATGCAACAGCAGCTCCAGAGGATCATTCTGTTGGTC-TAGAA-AAG GATGATTGGCCCTG-AATGCCATCAGTTGAEST: gi|192294124|gb|FG986213.1|FG986213
genomic: GACCATGCAACAGCAGCTCCAGAGGATCATTCTGTTGGTCCTAGAAGAAGgtgatgagtg ... tattgtgcagGATGATTGGCCCTGCAATGCCATCAGTTGA
EST: GACCATGCAACAGCAGCTCCAGAGGATCATTCTGTTGGTCCTAGAAGAAG GATGATTGGCCCTGCAATGCCATCAGTTGAATTACTTGCTGCTGCTGCAAA
genomic: GACCATGCAACAGCAGCTCCAGAGGATCATTCTGTTGGTCCTAGAAGAAGgtgatgagtg ... tattgtgcagGATGATTGGCCCTGCAATGCCATCAGTTGAATTACTTGCTGCTGCTGCAAA
ttttgttgatgtttattttttatttttcgaaattatcgcttactttattgtgcagGATGATTGGCCCTGCAATGCCATCAGTTGAATTACTTGCTGCTGCTGCAAAATTAACAGAGGCACAGACTGAGCTCAG
cgcttac putative branch site (score: 3)
cttacttt CT-rich tract
ttgatgtttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgagtgataactctttttgtcattttgttgatgtttattttttatttttcgaaattatcgcttactttattgtgcagGATGATTGGCCCTGCAATGCCATCAGTTGAATTACTTGCTGCTGCTGCAAAATTAACAGAGGCACAGACTGAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA