1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttagtttctgtcattcctcacgtgtattatgttgattttcttttcttgattaactatatcataggctaactgattctcttttctacgcatggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTATAATTATGCAATTGCATGACTGACAAATATTTTCTGAAGAAGTTTGTA
species | Glycine max |
transcript | GLYMA20G31560.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TTTTCCTGATG TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTEST: gi|193655942|gb|FK605298.1|FK605298
genomic: TTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAA-TTTTCTTTTTCCTGATG TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTEST: gi|58016942|gb|CX703684.1|CX703684
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTEST: gi|58016629|gb|CX703371.1|CX703371
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTEST: gi|254338729|gb|GR850040.1|GR850040
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG TAGCCAGTAGGTGCTGAATACAAACATCTGCTTCAAATGCTACGAAGAATTEST: gi|193614627|gb|FK565171.1|FK565171
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG TAGCCAGTAGGTGCTGAATACAAACGTGTGCTTCAAATEST: gi|208258320|gb|GE052863.1|GE052863
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAAT
EST: TCGATGAGCTTTCTTTTGGGTAAATTGAATTTTTCTTTTTCCTGATG TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTEST: gi|193521230|gb|FK480327.1|FK480327
genomic: TCGATGAGC-TTC-TTTGGG-AAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
tcttgattaactatatcataggctaactgattctcttttctacgcatggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTATAATTATGCAATTGCATGACTGACAAATATTTTCTGAAGAAGTTTGTA
attaactatatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttctgtcattcctcacgtgtattatgttgattttcttttcttgattaactatatcataggctaactgattctcttttctacgcatggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATTATAATTATGCAATTGCATGACTGACAAATATTTTCTGAAGAAGTTTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT