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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGATTTAGTTCGTGTTTCATATGCTAAGAGCCCTTTTGCCTGGACAACATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttctgtcattcctcacgtgtattatgttgattttcttttcttgattaactatatcataggctaactgattctcttttctacgcatggatgcag

Basic information

species Glycine max
transcript GLYMA20G31560.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208074460|gb|GD872437.1|GD872437
EST:     TTTTCCTGATG                         TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
genomic: TTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: gi|193655942|gb|FK605298.1|FK605298
EST:     ATCTGTTCGATGAGCTTCTTTGGGAAATTGAA-TTTTCTTTTTCCTGATG                         TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: gi|58016942|gb|CX703684.1|CX703684
EST:     ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG                         TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: gi|58016629|gb|CX703371.1|CX703371
EST:     ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG                         TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: gi|254338729|gb|GR850040.1|GR850040
EST:     ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG                         TAGCCAGTAGGTGCTGAATACAAACATCTGCTTCAAATGCTACGAAGAATT
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: gi|193614627|gb|FK565171.1|FK565171
EST:     ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG                         TAGCCAGTAGGTGCTGAATACAAACGTGTGCTTCAAAT
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAAT
EST: gi|208258320|gb|GE052863.1|GE052863
EST:     TCGATGAGCTTTCTTTTGGGTAAATTGAATTTTTCTTTTTCCTGATG                         TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
genomic: TCGATGAGC-TTC-TTTGGG-AAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
EST: gi|193521230|gb|FK480327.1|FK480327
EST:     ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATG                         TAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT
genomic: ATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttct ... atggatgcagTAGCCAGTAGGTGCTGAATACAAACATGTGCTTCAAATGCTACGAAGAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTGATTTAGTTCGTGTTTCATATGCTAAGAGCCCTTTTGCCTGGACAACATCTGTTCGATGAGCTTCTTTGGGAAATTGAATTTTTCTTTTTCCTGATGgttagtttctgtcattcctcacgtgtattatgttgattttcttttcttgattaactatatcataggctaactgattctcttttctacgcatggatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT