1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatgtatcctctttcattctagaatgctttggttggccaatttctctttcttacaacctgtatagtccactccttgaaatcaggagctttatagccaaaatgatatttacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGATGAGAAAAGGGCTAGTGCGGATGCAGAATTGGTGGACAAATACAATAAA
species | Glycine max |
transcript | GLYMA20G31560.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208087162|gb|GD887210.1|GD887210
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGTTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193381491|gb|FK347544.1|FK347544
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGCGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208204317|gb|GE006450.1|GE006450
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193351879|gb|FK316328.1|FK316328
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: GTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193655744|gb|FK601878.1|FK601878
genomic: GTGTTTGGACAGACACCCCTTCGGACAGGGCCC-AAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|207811575|gb|GD783944.1|GD783944
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193545070|gb|FK503101.1|FK503101
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTEST: gi|193373285|gb|FK335143.1|FK335143
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCT
EST: AGTGTTTGGACAG-CACCCCTTCGGACAGGGCCC-AAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193428583|gb|FK392733.1|FK392733
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: GTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|58016942|gb|CX703684.1|CX703684
genomic: GTGTTTGGACAGACACCCCTTCGGACAGGGCCC-AAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCNTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193409378|gb|FK374628.1|FK374628
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: GTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGACACTAGCTTCAAATGAAGAGGEST: gi|207699067|gb|GD680227.1|GD680227
genomic: GTGTTTGGACAGACACCCCTTCGGACAGGGCCC-AAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTG-CACTAGCTTCAAATGAAGAGG
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193727876|gb|FK664548.1|FK664548
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193495199|gb|FK463183.1|FK463183
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGG-AGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193602774|gb|FK560241.1|FK560241
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208273672|gb|GE065932.1|GE065932
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208174064|gb|GD968543.1|GD968543
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: TGTTTGGACAGACACCCCTTCGGACAGGGACCCAAAAAGACTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193515625|gb|FK474265.1|FK474265
genomic: TGTTTGGACAGACACCCCTTCGGACAGGG-CCCAAAAAG-CTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|58016629|gb|CX703371.1|CX703371
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCNTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193726806|gb|FK661560.1|FK661560
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208125157|gb|GD924681.1|GD924681
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193668073|gb|FK610645.1|FK610645
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193318000|gb|FK283758.1|FK283758
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|254338729|gb|GR850040.1|GR850040
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: CCCCTTCGGACAGGGCCC-AAAAGCTAAGATG-A TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|207808384|gb|GD779405.1|GD779405
genomic: CCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTGAGATGAA TTATTTGGAGGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193477881|gb|FK439194.1|FK439194
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193313431|gb|FK280044.1|FK280044
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208080314|gb|GD878910.1|GD878910
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208319695|gb|GE114570.1|GE114570
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208134930|gb|GD926619.1|GD926619
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193721040|gb|FK661304.1|FK661304
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208262041|gb|GE057946.1|GE057946
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|208312846|gb|GE112574.1|GE112574
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: TGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|207691507|gb|GD675224.1|GD675224
genomic: TGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|207698389|gb|GD680614.1|GD680614
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGAEST: gi|193342963|gb|FK306173.1|FK306173
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
tagtccactccttgaaatcaggagctttatagccaaaatgatatttacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGATGAGAAAAGGGCTAGTGCGGATGCAGAATTGGTGGACAAATACAATAAA
aaaatgatatttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatcctctttcattctagaatgctttggttggccaatttctctttcttacaacctgtatagtccactccttgaaatcaggagctttatagccaaaatgatatttacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGATGAGAAAAGGGCTAGTGCGGATGCAGAATTGGTGGACAAATACAATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA