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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACTCGACCAAGTTTAGCCGGGGTCCAAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcctctttcattctagaatgctttggttggccaatttctctttcttacaacctgtatagtccactccttgaaatcaggagctttatagccaaaatgatatttacatggcag

Basic information

species Glycine max
transcript GLYMA20G31560.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208214812|gb|GE010581.1|GE010581
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208087162|gb|GD887210.1|GD887210
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGTTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193381491|gb|FK347544.1|FK347544
EST:     AGCGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208204317|gb|GE006450.1|GE006450
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193351879|gb|FK316328.1|FK316328
EST:     GTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: GTGTTTGGACAGACACCCCTTCGGACAGGGCCC-AAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193655744|gb|FK601878.1|FK601878
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|207811575|gb|GD783944.1|GD783944
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193545070|gb|FK503101.1|FK503101
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCT
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCT
EST: gi|193373285|gb|FK335143.1|FK335143
EST:     AGTGTTTGGACAG-CACCCCTTCGGACAGGGCCC-AAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193428583|gb|FK392733.1|FK392733
EST:     GTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: GTGTTTGGACAGACACCCCTTCGGACAGGGCCC-AAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|58016942|gb|CX703684.1|CX703684
EST:     AGTGTTTGGACAGACACCCNTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193409378|gb|FK374628.1|FK374628
EST:     GTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGACACTAGCTTCAAATGAAGAGG
genomic: GTGTTTGGACAGACACCCCTTCGGACAGGGCCC-AAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTG-CACTAGCTTCAAATGAAGAGG
EST: gi|207699067|gb|GD680227.1|GD680227
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193727876|gb|FK664548.1|FK664548
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193495199|gb|FK463183.1|FK463183
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGG-AGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193602774|gb|FK560241.1|FK560241
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208273672|gb|GE065932.1|GE065932
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208174064|gb|GD968543.1|GD968543
EST:     TGTTTGGACAGACACCCCTTCGGACAGGGACCCAAAAAGACTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: TGTTTGGACAGACACCCCTTCGGACAGGG-CCCAAAAAG-CTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193515625|gb|FK474265.1|FK474265
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|58016629|gb|CX703371.1|CX703371
EST:     AGTGTTTGGACAGACACCCNTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193726806|gb|FK661560.1|FK661560
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208125157|gb|GD924681.1|GD924681
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193668073|gb|FK610645.1|FK610645
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193318000|gb|FK283758.1|FK283758
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|254338729|gb|GR850040.1|GR850040
EST:     CCCCTTCGGACAGGGCCC-AAAAGCTAAGATG-A                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: CCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|207808384|gb|GD779405.1|GD779405
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTGAGATGAA                         TTATTTGGAGGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193477881|gb|FK439194.1|FK439194
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193313431|gb|FK280044.1|FK280044
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208080314|gb|GD878910.1|GD878910
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208319695|gb|GE114570.1|GE114570
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208134930|gb|GD926619.1|GD926619
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193721040|gb|FK661304.1|FK661304
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208262041|gb|GE057946.1|GE057946
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|208312846|gb|GE112574.1|GE112574
EST:     TGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: TGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|207691507|gb|GD675224.1|GD675224
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|207698389|gb|GD680614.1|GD680614
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
EST: gi|193342963|gb|FK306173.1|FK306173
EST:     AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAA                         TTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA
genomic: AGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcc ... tacatggcagTTATTTGGAAGCATACAATGAAGCTACTGCACTAGCTTCAAATGAAGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCACTCGACCAAGTTTAGCCGGGGTCCAAAGGAAGGTAGAGGTGATACTAGTGTTTGGACAGACACCCCTTCGGACAGGGCCCAAAAAGCTAAGATGAAgtatgtatcctctttcattctagaatgctttggttggccaatttctctttcttacaacctgtatagtccactccttgaaatcaggagctttatagccaaaatgatatttacatggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG