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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATCAATTTGGCGTCTCCCATCGTTGATGTTCCCTTCCATATATTCTTTTCGGCGACATTGATTGGGCTCGTTCCAGCCTCTTATATTACTGTCAGAgtaagcatctgtgcctgttttgctgggattttagaatatgcttgctttaatggtttctatgaaattgatgttttttttttctttctaatttagatgtttg...

Basic information

species Glycine max
transcript GLYMA20G31540.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31540.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G71940.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTCATCAATTTGGCGTCTCCCATCGTTGATGTTCCCTTCCATATATTCTTTTCGGCGACATTGATTGGGCTCGTTCCAGCCTCTTATATTACTGTCAGAgtaagcatctgtgcctgt----tttgctgggatt----ttagaatatgcttgctttaatggtttctatgaaattgatgttttttttttctttctaatttagatgtttg------------------------------------
 || |||||| | || ||||| || || ||||| || |||||| | ||||||| ||||||||||||||| ||| |||| ||  ||||||| |||||||||||||||   | | |||      ||  |     ||    |||  |||||||  | || |   || || ||    |    | | ||||  |  ||||  | |  ||                                        
TTTTATCAATCTTGCATCTCCTATAGTCGATGTACCTTTCCATGTCTTCTTTTTGGCGACATTGATTGGTCTCATTCCTGCAGCTTATATAACTGTCAGAgtaagctcttttacctccatccttcaccatctttccgcttatgatatgctatcattcaacattcctgtg----tttcatctcttttcgccatctacataaagtgcgaagaacatggctttaaattctggttctgtttattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|48575487|gb|CO036428.1|CO036428
EST:     TTTCGGCGACATTGATTGGGCTCGTTCCAGCCTCTTATATTACTGTCAGA                         GCTGGCCTTGCTCTTGGGGATCTAAAGTCAATTAAGGATCTATATGATTTT
genomic: TTTCGGCGACATTGATTGGGCTCGTTCCAGCCTCTTATATTACTGTCAGAgtaagcatct ... gtttaaccagGCTGGCCTTGCTCTTGGGGATCTAAAGTCAATTAAGGATCTATATGATTTT
EST: gi|23730593|gb|BU763383.1|BU763383
EST:     TTTCGGCGACATTGATTGGGCTCGTTCCAGCCTCTTATATTACTGTCAGA                         GCTGGCCTTGCTCTTGGGGATCTAAAGTCAATTAAGGATCTATATGATTTT
genomic: TTTCGGCGACATTGATTGGGCTCGTTCCAGCCTCTTATATTACTGTCAGAgtaagcatct ... gtttaaccagGCTGGCCTTGCTCTTGGGGATCTAAAGTCAATTAAGGATCTATATGATTTT