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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtccttgtccccccttttataatgtcaatattttgaatttgttgggtgttgttaatgtggaattttgtttttttgggtggttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATAACCCCGACATTGCCGAATCTGTTCATCAATTTGGCGTCTCCCATCGTTG

Basic information

species Glycine max
transcript GLYMA20G31540.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31540.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G153706_T01 (Zea mays), 3'ss of exon 2
----------gtttgtccttgtccccccttttataatgtcaatattttgaatttgttgggtgttgttaatgtggaattttgtttttttgggtggttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATAACCCCGACATTGCCGAATCTGTTCATCAATTTGGCGTCTCCCATCGTTG
             | |  |||   | | |  |||  |  | ||       |  | | |     | | | | || ||       | ||   ||| ||||  |||||||| ||| | |  || | |||||||||||| |||||||||||||| ||||| || || ||||| |||   ||||| ||| ||||||| || || ||||
accaatatggcaatatgattgatgcacatgatatgttacccatgaaaatgacctatagtcatgtatgattatgtaacaaatactatt---gtgtttgatgcagATTGCTAAGAGGAAAGAAAAGCTGCTGAATTATATGCTTTTTCTGAGAATAACTCCAACTTTGCCCAATACATTCATAAATATGGCGTCACCGATTGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208077047|gb|GD876900.1|GD876900
EST:     CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG                         ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
EST: gi|48575487|gb|CO036428.1|CO036428
EST:     CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG                         ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
EST: gi|207749111|gb|GD717743.1|GD717743
EST:     CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG                         ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTT
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTT
EST: gi|120492946|gb|EH221113.1|EH221113
EST:     CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG                         ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
EST: gi|207831613|gb|GD801709.1|GD801709
EST:     CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG                         ATTGCGAAGCGTAGGGATAGGCTGCTGAAATTACATGCTT
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAA-TTACATGCTT
EST: gi|193587781|gb|FK541696.1|FK541696
EST:     CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG                         ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
EST: gi|23730593|gb|BU763383.1|BU763383
EST:     CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG                         ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatttgttgggtgttgttaatgtggaattttgtttttttgggtggttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATAACCCCGACATTGCCGAATCTGTTCATCAATTTGGCGTCTCCCATCGTTG
               tgttaat  putative branch site (score: 3)
                          aattttgttttttt  TA-rich tract