1 5' 3' | 2 5' 3' | 3 5' 3' |
CACTGCGGGTGCATCTTCCTGTTTCTTTTTGTCTAAGTTAATTGGGAGGCCTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtccttgtccccccttttataatgtcaatattttgaatttgttgggtgttgttaatgtggaattttgtttttttgggtggttgaatcag
species | Glycine max |
transcript | GLYMA20G31540.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATAEST: gi|48575487|gb|CO036428.1|CO036428
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
EST: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATAEST: gi|207749111|gb|GD717743.1|GD717743
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
EST: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTEST: gi|120492946|gb|EH221113.1|EH221113
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTT
EST: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATAEST: gi|207831613|gb|GD801709.1|GD801709
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
EST: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG ATTGCGAAGCGTAGGGATAGGCTGCTGAAATTACATGCTTEST: gi|193587781|gb|FK541696.1|FK541696
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAA-TTACATGCTT
EST: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATAEST: gi|23730593|gb|BU763383.1|BU763383
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
EST: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAG ATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
genomic: CTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtcctt ... gttgaatcagATTGCGAAGCGTAGGGATAGGCTGCTGAATTACATGCTTTTTCTGAGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTGCGGGTGCATCTTCCTGTTTCTTTTTGTCTAAGTTAATTGGGAGGCCTTTGGTTTCTTGGTTGTGGCCTGAAAAGCTAAGGTTCTTCCAAGCTGAGgtttgtccttgtccccccttttataatgtcaatattttgaatttgttgggtgttgttaatgtggaattttgtttttttgggtggttgaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA