1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTTCTCCACCGGCCTCTTCTGCATTTACCTCACCATGCCCTCGGCCGCTTACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattattaataccctaatcaataatccatgcctctttttgttcttcctattgtactttaattaattattatatgaaatgtctatttatttaattttttgtgttaaag
species | Glycine max |
transcript | GLYMA20G31540.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAA GGAACATGTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGGEST: gi|120492946|gb|EH221113.1|EH221113
genomic: TACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattatt ... tgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
EST: TACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAA GGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGGEST: gi|208032831|gb|GD830476.1|GD830476
genomic: TACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattatt ... tgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
EST: CCCCGCACCCTCTCCGATCTTCGCCTCCTCAA GGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGGEST: gi|208303536|gb|GE101281.1|GE101281
genomic: CCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattatt ... tgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
EST: TCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAA GGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
genomic: TCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattatt ... tgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTCTCCACCGGCCTCTTCTGCATTTACCTCACCATGCCCTCGGCCGCTTACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattattaataccctaatcaataatccatgcctctttttgttcttcctattgtactttaattaattattatatgaaatgtctatttatttaattttttgtgttaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC