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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattattaataccctaatcaataatccatgcctctttttgttcttcctattgtactttaattaattattatatgaaatgtctatttatttaattttttgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGGGTACTGCTCCACCTACATCTTCATGCAAACTTTCATGATTCCTGGGACA

Basic information

species Glycine max
transcript GLYMA20G31540.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31540.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G153706_T01 (Zea mays), 3'ss of exon 1
gtatattattaataccctaatcaataatccatgcctctttttgttcttcctattgtactttaattaattattatatgaaatgtctatttatt--taattttttgtg---ttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGGGTACTGCTCCACCTACATCTTCATGCAAACTTTCATGATTCCTGGGACA
            | |  |  |   ||    |||       |     |      | || |||     |  |  ||||  | || ||  ||  |  ||| |||||||    ||  || ||  ||||| |    || |||||  |  |||   || | || ||  | || || ||||| |  ||||||||||||||||| |||||||| |||||||||
------------tgctgtctttg-tagagtatggtgagaatgaaattagtggatatagtttggaataggac-atatatattg-ctgcttgctaataagtttttgtaaacttgcagAGACAATCTTGCTGTTTACGCGAGAGATTACCAAACGAATTTTATATTGGGTTATTGCTCAATATACATCTTCATGCAAACATTCATGATCCCTGGGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120491781|gb|EH219948.1|EH219948
EST:     TACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAA                         GGAACATGTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
genomic: TACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattatt ... tgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
EST: gi|120492946|gb|EH221113.1|EH221113
EST:     TACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAA                         GGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
genomic: TACACCAACCTCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattatt ... tgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
EST: gi|208032831|gb|GD830476.1|GD830476
EST:     CCCCGCACCCTCTCCGATCTTCGCCTCCTCAA                         GGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
genomic: CCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattatt ... tgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
EST: gi|208303536|gb|GE101281.1|GE101281
EST:     TCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAA                         GGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG
genomic: TCAAACTCCCCCGCACCCTCTCCGATCTTCGCCTCCTCAAgtatattatt ... tgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttaattaattattatatgaaatgtctatttatttaattttttgtgttaaagGGAACATCTTTCGACGTATGCGAGTAACCACCCTGCGCAGTTCATTCTTGGGTACTGCTCCACCTACATCTTCATGCAAACTTTCATGATTCCTGGGACA
                                        ttttttgt  CT-rich tract
     taattaattattatat  TA-rich tract