1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCCCTACTTTGAAACATCCGCAAAAGAGGATTACAATGTTGATGCTGCATTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACATgtaagtttcactttggactggtatgaagatgtacatgaatataagttgtagtactacataattgaacaagacatgtaccatctattgtctatgatgctag...
species | Glycine max |
transcript | GLYMA20G31150.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACAT ATATTTTCAAGGGATTCCTGAGGCGGCAGTTCCAGAGAATGAGCAGAGGAGEST: gi|192321753|gb|FK013621.1|FK013621
genomic: TTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACATgtaagtttca ... tcaattgcagATATTTTCAAGGGATTCCTGAGGCGGCAGTTCCAGAGAATGAGCAGAGGAG
EST: TTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACAT ATATTTTCAAGGGATTCCTGAGGCGGCAGTTCCAGAGAATGAGCAGAGGAGEST: gi|151399673|gb|EV269544.1|EV269544
genomic: TTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACATgtaagtttca ... tcaattgcagATATTTTCAAGGGATTCCTGAGGCGGCAGTTCCAGAGAATGAGCAGAGGAG
EST: TTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGGCAT ATATTTTCAAGGGATTCCTGAGGCGGCAGTTCCAGAGAATGAGCAGAGGAGEST: gi|151393176|gb|EV263051.1|EV263051
genomic: TTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACATgtaagtttca ... tcaattgcagATATTTTCAAGGGATTCCTGAGGCGGCAGTTCCAGAGAATGAGCAGAGGAG
EST: TTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACAT ATATTTTCAAGGGATTCCTGAGGCGGCAGTTCCAGAGAA
genomic: TTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACATgtaagtttca ... tcaattgcagATATTTTCAAGGGATTCCTGAGGCGGCAGTTCCAGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCCTACTTTGAAACATCCGCAAAAGAGGATTACAATGTTGATGCTGCATTCCTGTGTATTGCCAAAGCTGCTTTAGCCAATGAGCATGAACAAGACATgtaagtttcactttggactggtatgaagatgtacatgaatataagttgtagtactacataattgaacaagacatgtaccatctattgtctatgatgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaga