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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGTGCACAAGAAGTTTAGTCAGCAATATAAGGCTACCATTGGAGCTGATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcgtttcctgtttcaacggtatttcagtattctttttatttttctgctctaggattgttgtgaaatttttttgttgtgtttcaatttgtggtgttgtgttgtctggttgatag

Basic information

species Glycine max
transcript GLYMA20G31150.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298193144|gb|HO033578.1|HO033578
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|298186082|gb|HO036715.1|HO036715
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATGTGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|207794831|gb|GD763924.1|GD763924
EST:     ACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|151399673|gb|EV269544.1|EV269544
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTTGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|8827737|gb|BE211467.1|BE211467
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|298167138|gb|HO010577.1|HO010577
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATACCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|151393176|gb|EV263051.1|EV263051
EST:     ATTCTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|254337577|gb|GR849423.1|GR849423
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
EST: gi|192321754|gb|FK013622.1|FK013622
EST:     ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAA                         ATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT
genomic: ATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcg ... tggttgatagATATGGGACACTGCTGGGCAAGAGCGATTCCAGAGTCTCGGGGTTGCATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACGTGCACAAGAAGTTTAGTCAGCAATATAAGGCTACCATTGGAGCTGATTTTGTCACCAAAGAGCTTCAGATTGACGACAGACTTGTCACTCTACAAgtgggtttcgtttcctgtttcaacggtatttcagtattctttttatttttctgctctaggattgttgtgaaatttttttgttgtgtttcaatttgtggtgttgtgttgtctggttgatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT