1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgtacgttctttctagtttccctgcaataccgtttttcgaaactcgaaatctgattcattcattcccattgccattgccattgccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
species | Glycine max |
transcript | GLYMA20G31150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGG GGTTGGGAAGACCTCGTTGATGAATCAEST: gi|298186082|gb|HO036715.1|HO036715
genomic: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGGgtacgtacgt ... ccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
EST: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGG GGTTGGGAAGACCTCGTTGATGAATCAEST: gi|8827737|gb|BE211467.1|BE211467
genomic: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGGgtacgtacgt ... ccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
EST: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGG GGTTGGGAAGACCTCGTTGATGAATCAEST: gi|298167138|gb|HO010577.1|HO010577
genomic: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGGgtacgtacgt ... ccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
EST: TCGTTGCGCAGGCGAACCTTGCTCAGGGTCATCGTTCTCGGCGACAGCGG GGTTGGGAAGACCTCGTTGATGAATCAEST: gi|151393176|gb|EV263051.1|EV263051
genomic: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGGgtacgtacgt ... ccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
EST: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGG GGTTGGGAAGACCTCGTTGATGAATCAEST: gi|254337577|gb|GR849423.1|GR849423
genomic: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGGgtacgtacgt ... ccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
EST: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGG GGTTGGGAAGACCTCGTTGATGAATCAEST: gi|192321754|gb|FK013622.1|FK013622
genomic: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGGgtacgtacgt ... ccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
EST: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGG GGTTGGGAAGACCTCGTTGATGAATCA
genomic: TCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGACAGCGGgtacgtacgt ... ccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
gaaactcgaaatctgattcattcattcccattgccattgccattgccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
atctgat putative branch site (score: 4)
attcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtacgttctttctagtttccctgcaataccgtttttcgaaactcgaaatctgattcattcattcccattgccattgccattgccattgccagGGTTGGGAAGACCTCGTTGATGAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA