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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGGGTTGCCTACAAAGAATCTAGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAGgtttgttgccacaatttttattttgcttatttgttggtgattaaaactagttatcattagaaaacacctttatcaagcattttaactaattttagtttta...

Basic information

species Glycine max
transcript GLYMA20G31130.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31130.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g02460.t01 (Vitis vinifera), 5'ss of exon 7
GTCTGGGTTGCCTACAAAGAATCTAGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAGgtttgttgccacaatttttattttgcttatttgttggtgattaaaactagttatcattagaaaacacctttatcaagcatttta-actaattttagtttta--
|| |||||||| ||||||||||| ||||||||   |||| || ||||||||||||| |||||||||||||||||||    ||   |  |  |  ||     | |  |||||  || |  | |  |   | |  | |||||      |    |||  || |||  | | |   |    
GTTTGGGTTGCTTACAAAGAATCAAGTTGGATCAGTGCATTCCTTTGGATAATTCTATTGATATGTTTTGGCAGgt--aatgttcccttcatggttcaaaatttcagttggctat-atcatttatctgcttatgcaaacatgcagcttggccatcatatactgctatgaagctagag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301408|gb|FG998400.1|FG998400
EST:     AGTTGGATTTCTGCA-TCTTTTGGATAATTCTCTTGATATGTTTTGGCAG                         CATTACTACTTGCTTCTACAT-ACATGGCAGCTGTTC-AGATATCTCGTGA
genomic: AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAGgtttgttgcc ... aaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA
EST: gi|151397729|gb|EV267602.1|EV267602
EST:     AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAG                         CATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA
genomic: AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAGgtttgttgcc ... aaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA
EST: gi|192294992|gb|FG986711.1|FG986711
EST:     AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAG                         CATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA
genomic: AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAGgtttgttgcc ... aaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA