1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttatccctttaaccatttaccatatggtgcatgcttcactaggttctaacaattctaacttctcatttttttgtggttatttacttttcaaaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGAAGATCCTGCTTACCTTGTTTTA
species | Glycine max |
transcript | GLYMA20G31130.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTGGATTTCTGCA-TCTTTTGGATAATTCTCTTGATATGTTTTGGCAG CATTACTACTTGCTTCTACAT-ACATGGCAGCTGTTC-AGATATCTCGTGAEST: gi|151397729|gb|EV267602.1|EV267602
genomic: AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAGgtttgttgcc ... aaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA
EST: AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAG CATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGAEST: gi|192294992|gb|FG986711.1|FG986711
genomic: AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAGgtttgttgcc ... aaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA
EST: AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAG CATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA
genomic: AGTTGGATTTCTGCAATCTTTTGGATAATTCTCTTGATATGTTTTGGCAGgtttgttgcc ... aaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGA
ctaacaattctaacttctcatttttttgtggttatttacttttcaaaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGAAGATCCTGCTTACCTTGTTTTA
ttctaac putative branch site (score: 1)
ttttc putative PPT
ttatttacttttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatccctttaaccatttaccatatggtgcatgcttcactaggttctaacaattctaacttctcatttttttgtggttatttacttttcaaaattttcagCATTACTACTTGCTTCTACATTACATGGCAGCTGTTCCAGATATCTCGTGAAGATCCTGCTTACCTTGTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - cccttta
- - - - - - ccattta
- - - - - - - - - -ccatatg
- - - - - - - - - - - - - - gcatgct