1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agaatagagcgatcgtagaattagtcgatttcctattttttggtttaccacttcctctctctatggaataaattttgtccctcaattttgtttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG
species | Glycine max |
transcript | GLYMA20G31130.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACC GTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCEST: gi|151397729|gb|EV267602.1|EV267602
genomic: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACCgtaagtaaca ... tttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGC
EST: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACC GTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCEST: gi|18040383|gb|BM308677.1|BM308677
genomic: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACCgtaagtaaca ... tttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGC
EST: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACC GTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCEST: gi|213595164|gb|DB972098.1|DB972098
genomic: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACCgtaagtaaca ... tttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGC
EST: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACC GTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCEST: gi|192294992|gb|FG986711.1|FG986711
genomic: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACCgtaagtaaca ... tttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGC
EST: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACC GTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCEST: gi|213617205|gb|DB963768.1|DB963768
genomic: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACCgtaagtaaca ... tttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGC
EST: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACC GTGCATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGC
genomic: TACACTGTCTTCACCGATGGTCTTCCGTTTCGCAAAGAACTTCTCACACCgtaagtaaca ... tttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGC
taccacttcctctctctatggaataaattttgtccctcaattttgtttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG
gtttgat putative branch site (score: 5)
ttttgttt CT-rich tract
tatggaataaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatagagcgatcgtagaattagtcgatttcctattttttggtttaccacttcctctctctatggaataaattttgtccctcaattttgtttgattcagGTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccctca