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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTACATCTGCCTATATTGTTGTGCAATTTCTGAAGCTGTCATCTCAAGAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAAgtatgtctacagaagcactactatatagtaaagttttctcaacattttccattccttttaaaatttaatatgttttcttgatccatggataatggtgtca...

Basic information

species Glycine max
transcript GLYMA20G31130.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301408|gb|FG998400.1|FG998400
EST:     GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAA                         GAACGGCACAGCACCCCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT
genomic: GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAAgtatgtctac ... ttttacatagGAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT
EST: gi|151397729|gb|EV267602.1|EV267602
EST:     GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAA                         GAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT
genomic: GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAAgtatgtctac ... ttttacatagGAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT
EST: gi|18040383|gb|BM308677.1|BM308677
EST:     GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAA                         GAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT
genomic: GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAAgtatgtctac ... ttttacatagGAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT
EST: gi|213595164|gb|DB972098.1|DB972098
EST:     GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAA                         GAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCG
genomic: GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAAgtatgtctac ... ttttacatagGAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCG
EST: gi|192294992|gb|FG986711.1|FG986711
EST:     GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAA                         GAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT
genomic: GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAAgtatgtctac ... ttttacatagGAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT
EST: gi|213617205|gb|DB963768.1|DB963768
EST:     GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAA                         GAACGGCACAGCACCTCANAGAAAGCATTCATCTATCGTGACTCTAACAAT
genomic: GAATCTTCACAGGATCCTATGTATTATGTTCTATTGCGGAATCCAAATAAgtatgtctac ... ttttacatagGAACGGCACAGCACCTCAAAGAAAGCATTCATCTATCGTGACTCTAAGAAT