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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCGgtaagtcaacgacttcttgacttcgttattttcttcagtattttagatagacacagcacataccacttttttaattttaattgaaactcagtgtttcttt...

Basic information

species Glycine max
transcript GLYMA20G31130.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31130.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g02460.t01 (Vitis vinifera), 5'ss of exon 2
GTGGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCGgtaagtcaacgacttcttgacttcgttattttcttcagtattttagatagacacagcacataccacttttttaattttaattgaaactcagtgtttcttt-------
||||||||| |||||  || ||||||| |||||||| |||||||||||||||||| | |||      | || |||     | ||  ||| | || || | | | |        |  ||||  ||   ||| |   | | |  |  | || ||       
GTGGATGGCTGCAACCCTGGTTGATTTCTATATCAATGTTGTAGCTTTGGCGgtatgacaa-----acctgccttttccttctttctcaatcttgtacaaacaaattattttcatgacttcatt--ctttcaccaagaattggaatgtcattgtacaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301408|gb|FG998400.1|FG998400
EST:     GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG                         GTCTGGGTTGCCTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
genomic: GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCGgtaagtcaac ... ctatcatcagGTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
EST: gi|151397729|gb|EV267602.1|EV267602
EST:     GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG                         GTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
genomic: GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCGgtaagtcaac ... ctatcatcagGTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
EST: gi|18040383|gb|BM308677.1|BM308677
EST:     GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG                         GTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
genomic: GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCGgtaagtcaac ... ctatcatcagGTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
EST: gi|213595164|gb|DB972098.1|DB972098
EST:     GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG                         GTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
genomic: GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCGgtaagtcaac ... ctatcatcagGTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
EST: gi|192294992|gb|FG986711.1|FG986711
EST:     GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG                         GTCTGGATTGCTCACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
genomic: GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCGgtaagtcaac ... ctatcatcagGTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT
EST: gi|213617205|gb|DB963768.1|DB963768
EST:     GCATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCG                         GTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAGTTCTGTGGATT
genomic: GGATGGCAGCAACTTTGATTGATTTTTATATCAACGTTGTAGCTTTGGCGgtaagtcaac ... ctatcatcagGTCTGGATTGCTTACAAGGAATCAAACTTAATCAGCTCAATTCTGTGGATT