Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcacttcaaacaaaaatatgaaaattaagtaaatcgaacctgctagtatgcaaatatagtaggtttgttttcttgttctctttgtttctcattgcccaaggtttgatatcaaatgaatacttttaagtttgcagTCAACCGAACTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTCGGAATATTTGCAAAACATGATATTCCTATTGGAAATGAATTAGCTTAT

Basic information

species Glycine max
transcript GLYMA20G30870.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207797218|gb|GD767964.1|GD767964
EST:     ATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTG                         TCAACCGAACTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGT
genomic: ATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGgtaatcactt ... aagtttgcagTCAACCGAACTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgtttctcattgcccaaggtttgatatcaaatgaatacttttaagtttgcagTCAACCGAACTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTCGGAATATTTGCAAAACATGATATTCCTATTGGAAATGAATTAGCTTAT
                     gtttgat  putative branch site (score: 5)
                          atatcaaatgaatact  TA-rich tract