1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tccttatcatcatctaatgaatattttgcgtcagaactctggattaactacctttataagttatattgatttgtttgcctttctttttatttctttccagGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACCCTGACAATGCATGTGGGGATAGCTGCCTGAATGTATTA
species | Glycine max |
transcript | GLYMA20G30870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAG GCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGAEST: gi|4396815|gb|AI495812.1|AI495812
genomic: GAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAGgttagtagtt ... ttctttccagGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGA
EST: GAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAG GCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGAEST: gi|213597927|gb|DB958308.1|DB958308
genomic: GAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAGgttagtagtt ... ttctttccagGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGA
EST: GAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAG GCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGA
genomic: GAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAGgttagtagtt ... ttctttccagGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGA
aactacctttataagttatattgatttgtttgcctttctttttatttctttccagGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACCCTGACAATGCATGTGGGGATAGCTGCCTGAATGTATTA
tttgtttgcctttctt CT-rich tract
tttataagttatattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttatcatcatctaatgaatattttgcgtcagaactctggattaactacctttataagttatattgatttgtttgcctttctttttatttctttccagGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACCCTGACAATGCATGTGGGGATAGCTGCCTGAATGTATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - ctctgga
- - - - - - - - - - - - - - - - - - - - - - - -ctacctt