1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctgtgtgtgagtataaagctatcagagatgagtcccgaacatattaatttatgtgctttgctctctctctaaaattatgtatattttctatttttacagGTTACCAATACAACCAGTTGCTCAGATG
species | Glycine max |
transcript | GLYMA20G30870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCTTACTGCATTCGAAGTTCGTTAATCATTGCGCATTTTTGCAGCACAG GTTACCAATACAACCAGTTGCTCAGATGEST: gi|4396815|gb|AI495812.1|AI495812
genomic: CGCTTACTGCATTCGAAGTTCGTTAATCATTGCGCATTTTTGCAGCACAGgtttcaccct ... atttttacagGTTACCAATACAACCAGTTGCTCAGATG
EST: CGCTTACTGCATTCGAAGTTCGTTAATCATTGCGCATTTTTGCAGCACAG GTTACCAATACAACCAGTTGCTCAGATGEST: gi|213597927|gb|DB958308.1|DB958308
genomic: CGCTTACTGCATTCGAAGTTCGTTAATCATTGCGCATTTTTGCAGCACAGgtttcaccct ... atttttacagGTTACCAATACAACCAGTTGCTCAGATG
EST: CGCTTACTGCATTCGAAGTTCGTTAATCATTGCGCATTTTTGCAGCACAG GTTACCAATACAACCAGTTGCTCAGATG
genomic: CGCTTACTGCATTCGAAGTTCGTTAATCATTGCGCATTTTTGCAGCACAGgtttcaccct ... atttttacagGTTACCAATACAACCAGTTGCTCAGATG
taatttatgtgctttgctctctctctaaaattatgtatattttctatttttacagGTTACCAATACAACCAGTTGCTCAGATG
tattttctattttt CT-rich tract
tctctaaaattatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgtgtgtgagtataaagctatcagagatgagtcccgaacatattaatttatgtgctttgctctctctctaaaattatgtatattttctatttttacagGTTACCAATACAACCAGTTGCTCAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -gtgtgtg
- - - - - - - - - - - - - - - - - cccgaac