1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgctctgctgtcatcgtgcaactgtaacgtatgattgctatttgtatttgcttgtctagttttgtgttcatctcttatttaaagctctcctccatgcagAAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATACGGCCTGCCATTGAAGAGCACGAGAGGGATAGCCAAGACAGTGTATCCA
species | Glycine max |
transcript | GLYMA20G30870.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAGGAAGCACAAGAGGAGATTTTAAATTGTGAG AAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATAEST: gi|10238880|gb|BE807776.1|BE807776
genomic: CAAGGAAGCACAAGAGGAGATTTTAAATTGTGAGgtatgacttg ... ctccatgcagAAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATA
EST: CTGCCCTCCTAGCATTCAAGGAAGCACAAGAGGAGATTTTAAATTGTGAG AAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATAEST: gi|213606377|gb|DB976510.1|DB976510
genomic: CTGCCCTCCTAGCATTCAAGGAAGCACAAGAGGAGATTTTAAATTGTGAGgtatgacttg ... ctccatgcagAAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATA
EST: CTGCCCTCCTAGCATTCAAGGAAGCACAAGAGGAGATTTTAAATTGTGAG AAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATA
genomic: CTGCCCTCCTAGCATTCAAGGAAGCACAAGAGGAGATTTTAAATTGTGAGgtatgacttg ... ctccatgcagAAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATA
tatttgcttgtctagttttgtgttcatctcttatttaaagctctcctccatgcagAAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATACGGCCTGCCATTGAAGAGCACGAGAGGGATAGCCAAGACAGTGTATCCA
ctctcctccat CT-rich tract
atctcttatttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctctgctgtcatcgtgcaactgtaacgtatgattgctatttgtatttgcttgtctagttttgtgttcatctcttatttaaagctctcctccatgcagAAAATAAAGGACGATGCTACATCTGCTCTTGATTCCTTATACGATGAAATACGGCCTGCCATTGAAGAGCACGAGAGGGATAGCCAAGACAGTGTATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- -ctctgct
- - - - - - - - - gcaactg
- - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg