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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttttttttcattttagtttttgcctcacttccttcatctatgtctaggtttttatatttttattattattttattgaaaagcaatattgttcatgttaatgtgtgtttgagtcaagtaacaaggacattattactttgaagGATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAG

Basic information

species Glycine max
transcript GLYMA20G30870.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724082|gb|BW679979.1|BW679979
EST:     GTTACCAATACAACCAGTTGCTCAGATG                         GATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAG
genomic: GTTACCAATACAACCAGTTGCTCAGATGgtaatttttt ... tactttgaagGATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAG
EST: gi|4396815|gb|AI495812.1|AI495812
EST:     GTTACCAATACAACCAGTTGCTCAGATG                         GATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAG
genomic: GTTACCAATACAACCAGTTGCTCAGATGgtaatttttt ... tactttgaagGATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAG
EST: gi|213597927|gb|DB958308.1|DB958308
EST:     GTTACCAATACAACCAGTTGCTCAGATG                         GATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAG
genomic: GTTACCAATACAACCAGTTGCTCAGATGgtaatttttt ... tactttgaagGATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcatgttaatgtgtgtttgagtcaagtaacaaggacattattactttgaagGATCTTCATACTGAAGAGTTGCCTCAGTACATACATATGAATCAGAATGAGTTTTGCATACGAAG
                           aagtaac  putative branch site (score: 2)
                                            ttacttt  putative PPT
                                        attattactttgaa  TA-rich tract