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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATGGTACAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttgaattaattccaagactgcattgtgtcatcgtcttgtgattgtttgcatttgattttaaagtaggagctttcattttgaattttcttactatatttataatgattgcag

Basic information

species Glycine max
transcript GLYMA20G30750.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30750.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g33830.1 (Oryza sativa), 5'ss of exon 3
TTCATGGTACAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttgaattaattccaagactgcattgtgtcatcgtcttgtgattgtttgcatttgattttaaagtaggagctttcattttgaattttcttactatatttataatgattgcag-
 ||||||||   | |  | ||||| ||  | |||||||||| ||| ||  | || |||||||||||||||||||| || ||||| || ||||| |||||||||||             | | | ||   |||| |   |   |||| |    |  |     |  |  |   |     | || || ||      | | ||| |   | || |     |  
CTCATGGTATCATTTTCTGAAGAAGGCAAGTGGTGGCTGCAGTGATCTTATGTATAGTGGCCACATGCTTGTTGCTGTCCTCACCGCTATGGCATGGACGgtaag-------------ctatggctattttgtctt-ccagattgtcacaagtcacgaccaagatgcattcatttattctccttatg-----ccctgctaaaaccaaaacggaattaac

upper sequence: GLYMA20G30750.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g34620.1 (Oryza sativa), 5'ss of exon 3
TTCATGGTACAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttgaattaattccaagactgcattgtgtcatcgtcttgtgattgtttgcatttgattttaaagtaggagctttcattttgaattttcttactatatttataatgattgcag
||||||||||  |||  | ||||||||| | ||||| |||||||| ||  | |||||||| |||||||||||||| || || || || ||||| |||||||||     ||   || || ||    | |  |||  || | ||     | | | |  || || | ||    | | ||||   | |  || ||   |     || |||| |  |      
TTCATGGTACCATCTACTGAAGAAAGCTAGTGGTGGTTGCAATGATCTTATGTACAGTGGGCACATGCTTGTTGCTGTTCTTACTGCAATGGCGTGGACGgta-----tgtcatactttcaccttttccctgttacaacatca---aaatctctatatgtgctgttttgttggaagctggaaat--gagttactt----gtacttattagaacc----

upper sequence: GLYMA20G30750.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G047365_T01 (Zea mays), 5'ss of exon 3
TTCATGGTACAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttgaat-taattccaagactgcattgtgtcatcgtcttgtgat-tgtttgcatttgattttaaa-----gtaggagctttcatt-ttgaattttcttactatatttataatgattgcag
||| ||||||  |||  | ||||||||| | || ||||||||||||||  | |||||||| || ||||||||||| || || || || ||||| |||||||||| || | | | |  ||  ||  | | ||      || |  || | ||  | |  ||| |      ||      ||   | ||   |     |   | |     | | | |||     |  |||
TTCGTGGTACCATCTTCTGAAGAAAGCTAGTGGCGGCTGCAATGACCTTATGTACAGTGGACATATGCTTGTTGCTGTCCTGACTGCAATGGCGTGGACGgtaatatataagtgtcgttttaaatccgtatatcacaatagcatttttatacgctcccatgttgcccaaagggttcgtcataactcgtacggccgccgtatacctttgtttctatgtgtttcacag

upper sequence: GLYMA20G30750.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0072g00410.t01 (Vitis vinifera), 5'ss of exon 3
TTCATGGTACAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttgaattaattccaagactgcattgtgtcatcgtcttgtgattgtttgcatttgattttaaagt--aggagctttcattttgaattttcttactatatttataa---tgattgcag
 |||||||||| |||| |||||||||||||||| || |||||||||||| |||||||||||||||| ||||| || || || || || |||||||||||||||    || | | ||  |    | | | |  | |   | | |  ||||   | ||| |     ||||| |  |  |   |  ||||||  | ||  | || | |  | ||   || ||||||
GTCATGGTACAATCTGCTAAAGAAAGCTGGAGGAGGATGCAATGACCTCATATACAGTGGCCACATTCTTGTAGCAGTACTGACTGCTATGGCTTGGACGgtata--tttattaaacacttgcaatccctcctcttgacatttattgatcagtagcactgaggcttaaaatgcataatactaaattttgtgtctttct-ctgtgtcaaaaaaaatgtttgcag

upper sequence: GLYMA20G30750.1 (Glycine max), 5'ss of exon 3
lower sequence: EFJ14260 (Selaginella moellendorffii), 5'ss of exon 3
TTCATGGTACAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaag-atttgaattaattccaagactgcattgtgtcatcgtcttgtgattgtttgcatttgattttaaagtaggagctttcattttgaattttcttactatatttataatgattgcag
 || |||| ||     || |||| ||||||||| ||||||||||| ||| | | ||| |||||||| || ||| | |||||||| |||||||| ||||| ||||| |   | || ||||       | ||| || |  ||||  |    |   |  | | | |                                                        
ATCGTGGTTCAACACTTTGAAGAGAGCTGGAGGAGGCTGCAATGATCTCGTTTTCAGCGGCCACATTCTCGTTTCAGTGCTCACTGCCATGGCATGGACTgtaagtacaaggatcaatttttctttttcat-gttttctcgttctcaagtgactaccctctcag-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193305120|gb|FK270365.1|FK270365
EST:     TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACG                         GAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCAC
genomic: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttg ... atgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCAC
EST: gi|207821303|gb|GD790088.1|GD790088
EST:     TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACG                         GAAGCATATGGAGGATT
genomic: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttg ... atgattgcagGAAGCATATGGAGGATT
EST: gi|208271699|gb|GE071897.1|GE071897
EST:     TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACG                         GAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCT
genomic: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttg ... atgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCT
EST: gi|208149475|gb|GD948151.1|GD948151
EST:     CCATGGCTTGGACG                         GAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCAC
genomic: CCATGGCTTGGACGgtaagatttg ... atgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCAC