1 5' 3' | 2 5' 3' | 3 5' 3' |
...agagtgtgtcttggcttgttttacataaacttaacttcaaccaggtgttgtgatttctatttgaaaaatgagaaatcatttacttatttttctctgacagGAACACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAATGAGAAACTTCCTACTCCAATTGTTGAGATACTAAGAGCTCGAATCATT
species | Glycine max |
transcript | GLYMA20G30750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGATCTCCGTCCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCT GAACACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAA
genomic: ATGATCTCCGTCCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCTgtaactgtct ... tctctgacagGAACACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAA
tgttgtgatttctatttgaaaaatgagaaatcatttacttatttttctctgacagGAACACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAATGAGAAACTTCCTACTCCAATTGTTGAGATACTAAGAGCTCGAATCATT
tttacttatttttctc CT-rich tract
tatttgaaaaatgaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagtgtgtcttggcttgttttacataaacttaacttcaaccaggtgttgtgatttctatttgaaaaatgagaaatcatttacttatttttctctgacagGAACACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAATGAGAAACTTCCTACTCCAATTGTTGAGATACTAAGAGCTCGAATCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
-gagtgtg
- - - - - - -gcttgtt
- - - - - - - - - - - - - - - - - - tcaacca
- - - - - - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat