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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCGTTCATCGCCTCCATGCTCTTCATGCTCGCCGCCCTCCTCTGCGAAATGATCTCCGTCCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCTgtaactgtcttccattccaactccattttctcgttccttcttatctcgtgattctgtattgatcttgatgagatttcgtgaagtgaattggatctcgttt...

Basic information

species Glycine max
transcript GLYMA20G30750.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G30750.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g33830.1 (Oryza sativa), 5'ss of exon 1
TTCCGTTCATCGCCTCCATGCTCTTCATGCTCGCCGCCCTCCTCTGCGAAATGATCTCCGTCCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCTgtaactgtcttccattccaactccattttctcgt--tccttcttatctcgtgattctgtattgatcttgatgagatt-tcgtgaagtgaattggatctcgttt
                 |||    |||||||||||||  ||||||||||     |||||||||||| |||| || |||||||||||||| | ||||||| || | |  ||||   | | |  |        ||   ||         |  |  || ||    | |   | | | | | ||| |   |   |  ||  ||||| 
-----------------ATGGCGCTCATGCTCGCCGCGTTCCTCTGCGAGGCCGTCTCCGTCCGCTTCGTCTCCACCGTCCTCGGCCTCCATTGGCACCGgtcagtcccttcttcttctagccggccgcagcgaaatcagcgagggtttctttttttggggggtttcgggtaaaaatgtcgggggcttggt--gacatcgtt-

upper sequence: GLYMA20G30750.1 (Glycine max), 5'ss of exon 1
lower sequence: AC185648.3_FGT007 (Zea mays), 5'ss of exon 1
TTCCGTTCATCGCCTCCATGCTCTTCATGCTCGCCGCCCTCCTCTGCGAAATGATCTCCGTCCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCTgt-aactgtcttccattccaactccattttctcgttccttcttatctcgtgattctgtatt--gatcttgatgagatttcgtgaagtgaattggatctcgttt
  | |||| ||||| |||||   |||||||||||||| || ||||||||    ||||||||||||| ||||| | |||||||||||||  | ||||||| || | ||   |||| |||      |   | | ||         | |    ||     ||||   |  ||   ||  ||||   | |  |||  |   |     
CGCGGTTCTTCGCCGCCATGGCGTTCATGCTCGCCGCGCTGCTCTGCGAGGCCATCTCCGTCCGCTTCGTCAGCACCGTCCTCGGCCTGCAGTGGCACCGgtcagctcctttcctttctcgtgactgatgcgcgcgatgcgaaaccgatcgaccaaatatttgaacatttcagaattttccctacgcaaatgcgtgatta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600351|gb|DB955891.1|DB955891
EST:     ATGATCTCCGTCCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCT                         GAACACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAA
genomic: ATGATCTCCGTCCGCTCCGTCACCGCCGTCCTCGGCCTCGACTGGCACCTgtaactgtct ... tctctgacagGAACACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAA