1 5' 3' | 2 5' 3' | 3 5' 3' |
...atcaataccttcctctatgtctatatgaacctgtccaccttatagggacattttgctcgtatgagaaggtcctgcaaagtaacatactcttctttcttagTTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGATTGGGGTTCGATGAGCTTTCTAATTGATTTTCTGCGACCCACTGTCTCCGAAGGACCTTCATG
species | Glycine max |
transcript | GLYMA20G30750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACAGATCATGATGCTATCAGCCGGGTGATAAAGCTCGATACAGCTTACG TTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGAEST: gi|193584083|gb|FK540259.1|FK540259
genomic: TACAGATCATGATGCTATCAGCCGGGTGATAAAGCTCGATACAGCTTACGgtatgcacta ... tctttcttagTTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGA
EST: GCCGGGTGATAAAGCTCGATACAGCTTACG TTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGATTGGGGTTCGATGAEST: gi|207821303|gb|GD790088.1|GD790088
genomic: GCCGGGTGATAAAGCTCGATACAGCTTACGgtatgcacta ... tctttcttagTTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGATTGGGGTTCGATGA
EST: GCCGGGTGATAAAGTCTCGATACAGCTTACG TTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGATTGGGGTTCGATGA
genomic: GCCGGGTGATAAAG-CTCGATACAGCTTACGgtatgcacta ... tctttcttagTTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGATTGGGGTTCGATGA
ggacattttgctcgtatgagaaggtcctgcaaagtaacatactcttctttcttagTTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGATTGGGGTTCGATGAGCTTTCTAATTGATTTTCTGCGACCCACTGTCTCCGAAGGACCTTCATG
aagtaac putative branch site (score: 2)
catactcttctttctt CT-rich tract
aaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcaataccttcctctatgtctatatgaacctgtccaccttatagggacattttgctcgtatgagaaggtcctgcaaagtaacatactcttctttcttagTTGACATTGGAAAACCAGTTGGTGACTACCAGCCAGATTGGGGTTCGATGAGCTTTCTAATTGATTTTCTGCGACCCACTGTCTCCGAAGGACCTTCATG
- - - - cttcctc
- - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - ccacctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catactc