1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagatttgaattaattccaagactgcattgtgtcatcgtcttgtgattgtttgcatttgattttaaagtaggagctttcattttgaattttcttactatatttataatgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCACAGTGCCCAAAGAGAAATACGAGAACGCCATCATTACACTGTAGACTGCG
species | Glycine max |
transcript | GLYMA20G30750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACG GAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCACEST: gi|207821303|gb|GD790088.1|GD790088
genomic: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttg ... atgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCAC
EST: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACG GAAGCATATGGAGGATTEST: gi|208271699|gb|GE071897.1|GE071897
genomic: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttg ... atgattgcagGAAGCATATGGAGGATT
EST: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACG GAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTEST: gi|208149475|gb|GD948151.1|GD948151
genomic: TATACAGTGGCCACATGCTTGTTGCCGTGCTCACAGCCATGGCTTGGACGgtaagatttg ... atgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCT
EST: CCATGGCTTGGACG GAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCAC
genomic: CCATGGCTTGGACGgtaagatttg ... atgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCAC
tttaaagtaggagctttcattttgaattttcttactatatttataatgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCACAGTGCCCAAAGAGAAATACGAGAACGCCATCATTACACTGTAGACTGCG
ttcttac putative branch site (score: 2)
tttcattttgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatttgaattaattccaagactgcattgtgtcatcgtcttgtgattgtttgcatttgattttaaagtaggagctttcattttgaattttcttactatatttataatgattgcagGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCACAGTGCCCAAAGAGAAATACGAGAACGCCATCATTACACTGTAGACTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA