1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgtataaatccaatagtgttaaaatgtttcaggcattataatgcagtttgtgacactatgatttcctttccttctttctgttcagGTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCTAAGATATATTGGAAG
species | Glycine max |
transcript | GLYMA20G30620.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATTCAGTGAATGAAGGAAATGCTAAAAACTGGGATGGCCCTACTACCAT GTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCTEST: gi|120531949|gb|EH260082.1|EH260082
genomic: TATTCAGTGAATGAAGGAAATGCTAAAAACTGGGATGGCCCTACTACCATgtatgtataa ... ttctgttcagGTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCT
EST: TATTCAGTGAATGAAGGAAATGCTAAAAACTGGGATGGCCCTACTACCAT GTATGTGGAAAACTGCAAGTATCCCAAAGATGGTTCATCACCAAAGTCCCTEST: gi|31475753|gb|CD417781.1|CD417781
genomic: TATTCAGTGAATGAAGGAAATGCTAAAAACTGGGATGGCCCTACTACCATgtatgtataa ... ttctgttcagGTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCT
EST: TATTCAGTGAATGAAGGAAATGCTAAAAACTGGGATGGCCCTACTACCAT GTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCTEST: gi|192316334|gb|FK011679.1|FK011679
genomic: TATTCAGTGAATGAAGGAAATGCTAAAAACTGGGATGGCCCTACTACCATgtatgtataa ... ttctgttcagGTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCT
EST: TATTCAGTGAGTGAAGGAAATGCTAAAAACTGGGATGGCCCTACTACCAT GTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCT
genomic: TATTCAGTGAATGAAGGAAATGCTAAAAACTGGGATGGCCCTACTACCATgtatgtataa ... ttctgttcagGTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCT
aggcattataatgcagtttgtgacactatgatttcctttccttctttctgttcagGTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCTAAGATATATTGGAAG
ctatgatttcctttcc CT-rich tract
ttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtataaatccaatagtgttaaaatgtttcaggcattataatgcagtttgtgacactatgatttcctttccttctttctgttcagGTATGTGGAAAACTGCAAGTATCCAAAAGATGGTTCATCACCAAAGTCCCTAAGATATATTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG