1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAGgcaagtggttgataaattaataaatcttagtagtcttaatattccggcacgagaacttactaactaatgcatgacgatttgatcctccttgattagtttttcttattttggtgttcatttttatccaatttgtttcctattatctggattaaag
species | Glycine max |
transcript | GLYMA20G30620.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAG GGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAGEST: gi|120531951|gb|EH260084.1|EH260084
genomic: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAGgcaagtggtt ... tggattaaagGGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAG
EST: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAG GGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAGEST: gi|120529729|gb|EH257863.1|EH257863
genomic: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAGgcaagtggtt ... tggattaaagGGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAG
EST: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAG GGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAGEST: gi|192316335|gb|FK011680.1|FK011680
genomic: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAGgcaagtggtt ... tggattaaagGGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAG
EST: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAG GGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAGEST: gi|20497840|gb|BQ272770.1|BQ272770
genomic: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAGgcaagtggtt ... tggattaaagGGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAG
EST: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAG GGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAGEST: gi|209707338|gb|BW670901.1|BW670901
genomic: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAGgcaagtggtt ... tggattaaagGGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAG
EST: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAG GGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAG
genomic: GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAGgcaagtggtt ... tggattaaagGGTGAAGAGCAAAAGAAATTGGATGTCCTATCCAATGATGTCTTCATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGGTCTTGCTAAGCTTATTGGACTTGCAGGAGAGACAAATGTTCAGgcaagtggttgataaattaataaatcttagtagtcttaatattccggcacgagaacttactaactaatgcatgacgatttgatcctccttgattagtttttcttattttggtgttcatttttatccaatttgtttcctattatctggattaaag
- - - - - - - - - - - - - - AGGAGA