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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTACTCTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttacagaaaatagggagaaaaacaaaaattagtttagactaaaattatctcgacccatttttgagagggaaaaaaaaaaaagaaagataggaaat...

Basic information

species Glycine max
transcript GLYMA20G30620.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670382|gb|BE191489.1|BE191489
EST:     CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAAG                         GCACTTGATTTGGT
genomic: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGT
EST: gi|120531949|gb|EH260082.1|EH260082
EST:     CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGG                         GCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
genomic: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: gi|31475753|gb|CD417781.1|CD417781
EST:     CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCNAAGG                         GCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
genomic: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: gi|192316334|gb|FK011679.1|FK011679
EST:     CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGG                         GCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
genomic: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: gi|31466065|gb|CD408093.1|CD408093
EST:     GGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGG                         GCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
genomic: GGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTACTCTATGAAGTCTTCCCAATGTCATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttacagaaaatagggagaaaaacaaaaattagtttagactaaaattatctcgacccatttttgagagggaaaaaaaaaaaagaaagataggaaat

- - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGGA