1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcattaagaaaaataagagaatccatattgattttaattagaatattataaatgcatcatatgccagtgaaagtgatgaatctgctagctatgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTTGGTAGCTATGAAGATGTAGAGGAAATCAAGGCTCTTTACTCTGCTGATG
species | Glycine max |
transcript | GLYMA20G30620.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAAG GCACTTGATTTGGTEST: gi|120531949|gb|EH260082.1|EH260082
genomic: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGT
EST: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGG GCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|31475753|gb|CD417781.1|CD417781
genomic: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCNAAGG GCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|192316334|gb|FK011679.1|FK011679
genomic: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGG GCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTTEST: gi|31466065|gb|CD408093.1|CD408093
genomic: CATTCTTGATGGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
EST: GGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGG GCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
genomic: GGAACAAGCAGGAGGACAGGCTTTCACCGGCAACCAAAGGgtaatttaca ... atgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTT
ttataaatgcatcatatgccagtgaaagtgatgaatctgctagctatgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTTGGTAGCTATGAAGATGTAGAGGAAATCAAGGCTCTTTACTCTGCTGATG
atcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattaagaaaaataagagaatccatattgattttaattagaatattataaatgcatcatatgccagtgaaagtgatgaatctgctagctatgtcaacagGCACTTGATTTGGTTCCAAAGAAGTTGCACGAGCGATCTCCCATATTCCTTGGTAGCTATGAAGATGTAGAGGAAATCAAGGCTCTTTACTCTGCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - aatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgcta