1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tacctattctttcttatcttctttcccctgttttataatttgcttgaatgaattcagatattgttgttgcttttagtcatttaactcttctcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGAGTTGATAAGATAGTGGCTTCTGCATAATCTTGTATATCTTCCACCTCCA
species | Glycine max |
transcript | GLYMA20G30140.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG GTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGAEST: gi|8286337|gb|BE023896.1|BE023896
genomic: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGgtaggttctc ... tcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGA
EST: ANACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG GTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGAEST: gi|13563321|gb|BG551541.1|BG551541
genomic: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGgtaggttctc ... tcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGA
EST: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG GTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGAEST: gi|31459045|gb|CD401073.1|CD401073
genomic: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGgtaggttctc ... tcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGA
EST: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG GTGGAACAAACAGCTGTACGCATGCGGATATGGAGTGGACAAGACATTGGAEST: gi|192297109|gb|FG988205.1|FG988205
genomic: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGgtaggttctc ... tcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGA
EST: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG GTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGAEST: gi|209700017|gb|BW652929.1|BW652929
genomic: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGgtaggttctc ... tcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGA
EST: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG GTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGA
genomic: AGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGgtaggttctc ... tcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGA
gaatgaattcagatattgttgttgcttttagtcatttaactcttctcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGAGTTGATAAGATAGTGGCTTCTGCATAATCTTGTATATCTTCCACCTCCA
atttaac putative branch site (score: 3)
ctcttctc CT-rich tract
ttttagtcatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacctattctttcttatcttctttcccctgttttataatttgcttgaatgaattcagatattgttgttgcttttagtcatttaactcttctcaattgtagGTGGAACAAACAGCTGAACGCATGCGGATATGGAGTGGACAAGACATTGGAGTTGATAAGATAGTGGCTTCTGCATAATCTTGTATATCTTCCACCTCCA
- - - - - - - - - - -tttcccc
- - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - tgaattc