1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttcatagataataaatggaattgctaaaagaaaggagggagagagagagagagagaaacataactctccctaatgattctgaattttttccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG
species | Glycine max |
transcript | GLYMA20G30140.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAG GGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTCEST: gi|8286337|gb|BE023896.1|BE023896
genomic: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAGgtaatatacc ... ccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTC
EST: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAG GGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCANACCTTGCTGCTCEST: gi|13563321|gb|BG551541.1|BG551541
genomic: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAGgtaatatacc ... ccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTC
EST: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAG GGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTCEST: gi|192297109|gb|FG988205.1|FG988205
genomic: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAGgtaatatacc ... ccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTC
EST: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAG GGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTCEST: gi|209700017|gb|BW652929.1|BW652929
genomic: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAGgtaatatacc ... ccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTC
EST: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAG GGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTCEST: gi|8669788|gb|BE190895.1|BE190895
genomic: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAGgtaatatacc ... ccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTC
EST: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAG GGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTC
genomic: GGCTTCCACTGGGGTTCGTTCTTGGTTATACAGCAAATTTGGGGGTTGAGgtaatatacc ... ccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTC
gagagagagagaaacataactctccctaatgattctgaattttttccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG
ccctaat putative branch site (score: 3)
ttttttccccattt putative PPT
attctgaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcatagataataaatggaattgctaaaagaaaggagggagagagagagagagagaaacataactctccctaatgattctgaattttttccccatttagGGACTTTGGGGTGGTATGATATGTGGAATTGTTCTCCAGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - ggaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg