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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCTTGACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaactttgtcttattgtgtgtttcccaaaagttcagtaatgttcatttctcattgtttttctctcttcctcaaacacgtgacag

Basic information

species Glycine max
transcript GLYMA20G03010.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12772153|gb|BG237080.1|BG237080
EST:     ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG                         GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: gi|51335202|gb|CO979068.1|CO979068
EST:     ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG                         GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: gi|254327608|gb|GR840172.1|GR840172
EST:     ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG                         GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATTTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: gi|192302417|gb|FG995901.1|FG995901
EST:     ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG                         GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATTTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: gi|31473030|gb|CD415058.1|CD415058
EST:     ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG                         GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: gi|214005563|gb|DB984571.1|DB984571
EST:     ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG                         GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: gi|214005434|gb|DB984913.1|DB984913
EST:     ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG                         GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
EST: gi|214005323|gb|DB988871.1|DB988871
EST:     ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAG                         GTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA
genomic: ACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaac ... cacgtgacagGTTGCTTCCATGGCTTCAAATTTGAAGCGTCAGAGATCTTCGCTGAACAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTGCTTGACAAGCTGCGGTATATACCTAGTCGTGAAGCTCTGGCACTTCGAGCTGAGgcaagccaactttgtcttattgtgtgtttcccaaaagttcagtaatgttcatttctcattgtttttctctcttcctcaaacacgtgacag

- - - - - CAAGCT
- - - - -  AAGCTG
- - - - - - AGCTGC
- - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA